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Protein-RNA Complexes and Efficient Automatic Docking: Expanding RosettaDock Possibilities.

Adrien Guilhot-Gaudeffroy , Christine Froidevaux , Jérôme Azé , Julie Bernauer
PLoS ONE, 2014, 9 (9), pp.e108928. ⟨10.1371/journal.pone.0108928⟩
Journal articles hal-01071876v1

Single-shot diffraction data from the Mimivirus particle using an X-ray free-electron laser

Tomas Ekeberg , Martin Kauffmann , M Marvin Seibert , Chantal Abergel , Filipe Maia , et al.
Scientific Data , 2016, 3, pp.160060. ⟨10.1038/sdata.2016.60⟩
Journal articles hal-01768352v1
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A protocol to measure slow protein dynamics of the cholera toxin B pentamers using broadband dielectric spectroscopy

Laetitia Bourgeat , Lorenza Pacini , Anatoli Serghei , Claire Lesieur
STAR Protocols, 2022, 3 (3), pp.101561. ⟨10.1016/j.xpro.2022.101561⟩
Journal articles hal-03814967v1

Fully differentiable coarse-grained and all-atom knowledge-based potentials for RNA structure evaluation.

Julie Bernauer , Xuhui Huang , Adelene y L Sim , Michael Levitt
RNA, 2011, 17 (6), pp.1066-75. ⟨10.1261/rna.2543711⟩
Journal articles inria-00624999v1

Three dimensional reconstruction of 14 protofilaments GMPCPP-microtubules using TubuleJ.

Audrey Guesdon , Sophie Blestel , Claire Heichette , Charles Kervrann , Denis Chrétien
EMBO Conference Series on Microtubules - Structure, Regulation and Functions, Jun 2010, Heidelberg, Germany. pp.127
Conference papers hal-00497060v1

Effects of XMAP215 on microtubule dynamics and structure and its visualization by electron cryo-tomography.

Frédéric M. Coquelle , Sophie Blestel , Kazuhisa Kinoshita , Benjamin Vitre , Claire Heichette , et al.
EMBO Conference Series on Microtubules - Structure, Regulation and Functions, Jun 2010, Heidelberg, Germany. pp.97
Conference papers hal-00497063v1

Docetaxel serum protein binding with high affinity to alpha 1-acid glycoprotein.

C Urien , J. Barre , Christophe Morin , A Paccaly , G. Montay , et al.
Investigational New Drugs, 1996, 14 (2), pp.147-51
Journal articles hal-02268221v1
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ProtNAff: Protein-bound Nucleic Acid filters and fragment libraries

Antoine Moniot , Yann Guermeur , Sjoerd Jacob de Vries , Isaure Chauvot de Beauchêne
Bioinformatics, 2022, 38 (162022-07-01), pp.3911-3917. ⟨10.1093/bioinformatics/btac430⟩
Journal articles hal-03765772v1
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Low-resolution description of the conformational space for intrinsically disordered proteins

Daniel Förster , Leo Liberti , Antonio Mucherino , Jung-Hsin Lin , Thérèse E Malliavin , et al.
Scientific Reports, In press, ⟨10.1038/s41598-022-21648-9⟩
Journal articles hal-03796134v1
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Reactive pipelines for integrated structural bioinformatics resources

Isaure Chauvot de Beauchêne , Sjoerd Jacob de Vries
3D-BioInfo: Launch Meeting for a proposed ELIXIR Community in Structural Bioinformatics, Oct 2018, Basel, Switzerland
Conference poster hal-01925064v1
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Using Restraints in EROS-Dock Improves Model Quality in Pairwise and Multicomponent Protein Docking

Maria Elisa Ruiz Echartea , David Ritchie , Isaure Chauvot de Beauchêne
Proteins - Structure, Function and Bioinformatics, 2020, 88 (8), pp.1121-1128. ⟨10.1002/prot.25959⟩
Journal articles hal-02930827v1
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A hybrid combinatorial method for docking single stranded RNAs in a protein pockect at the thermodynamic equilibrium

Chinmay Singhal , Yann Ponty , Isaure Chauvot de Beauchêne
JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques), Jul 2018, Marseille, France
Conference papers hal-02394529v1
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Germline CDKN2A/P16INK4A mutations contribute to genetic determinism of sarcoma

Fanélie Jouenne , Isaure Chauvot de Beauchêne , Emeline Bollaert , Marie-Francoise Avril , Olivier Caron , et al.
Journal of Medical Genetics, 2017, 54 (9), pp.607-612. ⟨10.1136/jmedgenet-2016-104402⟩
Journal articles hal-01580787v1
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Structural and functional analysis of the Francisella lysine decarboxylase as a key actor in oxidative stress resistance

Jan Felix , Claire Siebert , Juila Novion Ducassou , Jérôme Nigou , Pierre Simon Garcia , et al.
Scientific Reports, 2021, 11 (1), pp.972. ⟨10.1038/s41598-020-79611-5⟩
Journal articles hal-03118173v1
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The Coherent Multi-Representation Problem with Applications in Structural Biology

Antonio Mucherino
10th International Work-Conference on Bioinformatics and Biomedical Engineering ( IWBBIO 2023 ), Jul 2023, Gran Canaria, Canary Islands, Spain. pp.338-346, ⟨10.1007/978-3-031-34953-9_27⟩
Conference papers hal-04167543v1
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Geometric and statistical methods for the analysis and prediction of structural interactions between biomolecules

Julie Bernauer
Bioinformatics [q-bio.QM]. Université Paris-Sud XI, 2015
Habilitation à diriger des recherches tel-01136261v1

Properties of Random Complex Chemical Reaction Networks and Their Relevance to Biological Toy Models

Erwan Bigan , Jean-Marc Steyaert , Stéphane Douady
Preprints, Working Papers, ... hal-00859004v1

X-ray structure of a CDP-alcohol phosphatidyltransferase membrane enzyme and insights into its catalytic mechanism

Przemyslaw Nogly , Ivan Yu. Gushchin , Alina Remeeva , Ana M. Esteves , Nuno Borges , et al.
Nature Communications, 2014, 5, pp.Article number: 4169. ⟨10.1038/ncomms5169⟩
Journal articles hal-01018657v1

Hyperosmotic stress contributes to mouse colonic inflammation through the methylation of protein phosphatase 2A.

Laurent Schwartz , Mohammad Abolhassani , Mohammad Pooya , Jean-Marc Steyaert , Xavier Wertz , et al.
AJP - Gastrointestinal and Liver Physiology, 2008, 295 (5), pp.G934-41. ⟨10.1152/ajpgi.90296.2008⟩
Journal articles hal-00858998v1

Crystal structure of chloroplast fructose-1,6-bisphosphate aldolase from the green alga Chlamydomonas reinhardtii

Théo Le Moigne , Edoardo Sarti , Antonin Nourisson , Mirko Zaffagnini , Alessandra Carbone , et al.
Journal of Structural Biology, 2022, 214 (3), pp.107873. ⟨10.1016/j.jsb.2022.107873⟩
Journal articles hal-03700038v1
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Maria-Elisa Ruiz-Echartea , Isaure Chauvot de Beauchêne , David Ritchie
CAPRI evaluation meeting, Apr 2019, Hinxton, United Kingdom
Conference papers hal-02394484v1
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ScipionTomo: Towards cryo-electron tomography software integration, reproducibility, and validation

Jorge Jiménez de la Morena , Pablo Conesa , Yunior Cesar Fonseca , Federico Pedro de Isidro-Gómez , David Herreros , et al.
Journal of Structural Biology, 2022, 214 (3), pp.107872. ⟨10.1016/j.jsb.2022.107872⟩
Journal articles hal-03775680v1
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Enhancing systematic protein-protein docking methods using ray casting: Application to ATTRACT

Yi Li , Juan Cortés , Thierry Simeon
Proteins - Structure, Function and Bioinformatics, 2011, 79 (11), pp.3037-3049. ⟨10.1002/prot.23127⟩
Journal articles hal-01982609v1

Community-Wide Assessment of Protein-Interface Modeling Suggests Improvements to Design Methodology.

Sarel J Fleishman , Timothy A Whitehead , Eva-Maria Strauch , Jacob E Corn , Sanbo Qin , et al.
Journal of Molecular Biology, 2011, 414 (2), in press. ⟨10.1016/j.jmb.2011.09.031⟩
Journal articles inria-00637848v1
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Protein conformational space at the edge of allostery: turning a nonallosteric malate dehydrogenase into an “allosterized” enzyme using evolution-guided punctual mutations

Antonio Iorio , Céline Brochier-Armanet , Caroline Mas , Fabio Sterpone , Dominique Madern
Molecular Biology and Evolution, 2022, 39 (9), pp.msac186. ⟨10.1093/molbev/msac186⟩
Journal articles hal-03781769v1
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Accurate determination of epitope for antibodies with unknown 3D structures

Shifa Tahir , Thomas Bourquard , Astrid Musnier , Yann Jullian , Yannick Corde , et al.
mAbs, 2021, 13 (1), pp.1-10. ⟨10.1080/19420862.2021.1961349⟩
Journal articles hal-03390655v1
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Active State of Sensory Rhodopsin II: Structural determinants for signal transfer and proton pumping

Ivan Yu. Gushchin , Anastasia Reshetnyak , Valentin Borshchevskiy , Andrii Ishchenko , Ekaterina Round , et al.
Journal of Molecular Biology, 2011, 412 (4), pp.591-600. ⟨10.1016/j.jmb.2011.07.022⟩
Journal articles hal-00766090v1

Promiscuous Nickel Import in Human Pathogens: Structure, Thermodynamics, and Evolution of Extracytoplasmic Nickel-Binding Proteins

Hugo Lebrette , Céline Brochier-Armanet , Barbara Zambelli , Hilde de Reuse , Elise Borezée-Durant , et al.
Structure, 2014, 22 (10), pp.1421-1432. ⟨10.1016/j.str.2014.07.012⟩
Journal articles hal-01084825v1

Epstein-Barr virus infection and clinical outcome in breast cancer patients correlate with immune cell TNF-α/IFN-γ response.

Gina Marrão , Mohammed Habib , Artur Paiva , Dominique Bicout , Catherine Fallecker , et al.
BMC Cancer, 2013, 14, pp.665. ⟨10.1186/1471-2407-14-665⟩
Journal articles hal-01132351v1

Daughter centriole morphogenesis and structural details of isolated human centrosomes revealed by cryo-electron tomography.

Paul Guichard , Anne-Marie Tassin , Sophie Blestel , Charles Kervrann , Sergio Marco , et al.
11e Colloque de la Société Française des Microscopies, Jun 2009, Paris, France. pp.134-135
Conference papers hal-00453373v1