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Fouille de données biomédicales complexes : extraction de règles et de profils génétiques dans le cadre de l'étude du syndrome métabolique

Sandy Maumus , Amedeo Napoli , Laszlo Szathmary , Sophie Visvikis-Siest
Journées Ouvertes Biologie Informatique Mathématiques - JOBIM 2005, 2005, Lyon, France. pp.169-173
Conference papers hal-00009610v1

The dog and rat olfactory receptor repertoires

Pascale Quignon , Mathieu Giraud , Maud Rimbault , Patricia Lavigne , Sandrine Tacher , et al.
Genome Biology, 2005, 6 (10), pp.R83. ⟨10.1186/gb-2005-6-10-r83⟩
Journal articles hal-00107100v1
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Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion

Nicolas Galtier , Camille Roux , Marjolaine Rousselle , Jonathan Romiguier , Emeric Figuet , et al.
Molecular Biology and Evolution, 2018, 35 (5), pp.1092 - 1103. ⟨10.1093/molbev/msy015⟩
Journal articles hal-01806906v1
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Invertebrate Data Predict an Early Emergence of Vertebrate Fibrillar Collagen Clades and an Anti-incest Model

Abdel Aouacheria , Caroline Cluzel , Claire Lethias , Manolo Gouy , Robert Garrone , et al.
Journal of Biological Chemistry, 2004, 279 (46), pp.47711-47719. ⟨10.1074/jbc.M408950200⟩
Journal articles hal-00427534v2

Development of a PCR-RFLP assay to identify Drosophila melanogaster among field-collected larvae

Vincent Raquin , Hélène Henri , Marine Vallat , François Leulier , Patricia Gibert , et al.
Ecology and Evolution, 2018, 8 (20), pp.10067 - 10074. ⟨10.1002/ece3.4453⟩
Journal articles hal-01916829v1

Persistent Interactions with Bacterial Symbionts Direct Mature-Host Cell Morphology and Gene Expression in the Squid-Vibrio Symbiosis

Natacha Kremer , Eric Koch , Adil El Filali , Lawrence Zhou , Elizabeth Heath-Heckman , et al.
mSystems, 2018, 3 (5), ⟨10.1128/mSystems.00165-18⟩
Journal articles hal-01916836v1
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Universal probabilistic programming offers a powerful approach to statistical phylogenetics

Fredrik Ronquist , Jan Kudlicka , Viktor Senderov , Johannes Borgström , Nicolas Lartillot , et al.
Communications Biology, 2021, 4 (1), ⟨10.1038/s42003-021-01753-7⟩
Journal articles hal-03438419v1
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TgAP2IX-5 is a key transcriptional regulator of the asexual cell cycle division in Toxoplasma gondii

Asma S. Khelifa , Cecilia Guillen Sanchez , Kevin M. Lesage , Ludovic Huot , Thomas Mouveaux , et al.
Nature Communications, 2021, 12, pp.116. ⟨10.1038/s41467-020-20216-x⟩
Journal articles hal-03107529v2
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Differential meta-analysis of RNA-seq data from multiple studies

Andrea Rau , Guillemette Marot , Florence Jaffrezic
2013
Preprints, Working Papers, ... hal-00834369v1
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Développement et utilisation de marqueurs RADseq pour l'étude de l'impact de Wolbachia sur l'évolution des génomes mitochondriaux chez les Arthropodes

Marie Cariou
Génomique, Transcriptomique et Protéomique [q-bio.GN]. Université Claude Bernard - Lyon I, 2015. Français. ⟨NNT : 2015LYO10092⟩
Theses tel-01317457v1

Microorganisms Associated with Mosquito Oviposition Sites: Implications for Habitat Selection and Insect Life Histories

Maxime Girard , Edwige Martin , Laurent Vallon , Vincent Raquin , Christophe Bellet , et al.
Microorganisms, 2021, 9 (8), pp.1589. ⟨10.3390/microorganisms9081589⟩
Journal articles hal-03324852v1
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Computational Methods for Evaluating Phylogenetic Models of Coding Sequence Evolution with Dependence between Codons

Nicolas Rodrigue , Claudia L Kleinman , Hervé Philippe , Nicolas Lartillot
Molecular Biology and Evolution, 2009, 26 (7), pp.1663 - 1676. ⟨10.1093/molbev/msp078⟩
Journal articles hal-03459082v1

Self and Nonself from a Genomic Perspective: Transposable Elements

Marie Fablet , Judit Salces-Ortiz , Bianca Fraga Menezes , Marlène Roy , Cristina Vieira
Evolutionary Biology: Self/Nonself Evolution, Species and Complex Traits Evolution, Methods and Concepts, 2 (5), Springer International Publishing, pp.111-128, 2017, ⟨10.1007/978-3-319-61569-1_6⟩
Book sections hal-03323222v1

Reductive genome evolution at both ends of bacterial population size spectrum

Bérénice Batut , Carole Knibbe , Gabriel Marais , Vincent Daubin
Nature Reviews Microbiology, 2014, 12 (12), pp.841-850. ⟨10.1038/nrmicro3331⟩
Journal articles hal-01092392v1
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Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells

Sarah Djebali , Julien Lagarde , Philipp Kapranov , Vincent Lacroix , Christelle Borel , et al.
PLoS ONE, 2012, 7, pp.1-22
Journal articles hal-00698428v1
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Intérêt de la métabolomique par HR-MAS-RMN en chirurgie hépato-biliaire et transplantation hépatique

François Faitot
Génomique, Transcriptomique et Protéomique [q-bio.GN]. Université de Strasbourg, 2017. Français. ⟨NNT : 2017STRAJ049⟩
Theses tel-01757131v1

Mathematical modeling of genetic regulatory networks: Stress responses in ıt Escherichia coli

Delphine Ropers , Hidde De Jong , Hans Geiselmann
P. Fu and M. Letterich and S. Panke. Systems Biology and Synthetic Biology, John Wiley & Sons, pp.235-271, 2009
Book sections hal-00793019v1

Modeling and formal verification of biological regulatory networks: an integrative approach

Pedro T. Monteiro , Ana T. Freitas , Delphine Ropers , Radu Mateescu , Hidde De Jong
Proceedings of the IEEE International Conference on Bioinformatics & Biomedicine (BIBM 2010). First Workshop on Knowledge Engineering, Discovery and Dissemination in Health (KEDDH10), 2010, Ottawa, Canada
Conference papers hal-00793023v1

A propos du séquençage de génomes

François Rechenmann , Joanna Jongwane
Interstices, 2010
Journal articles hal-00793031v1

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

Sara Berthoumieux , Hidde de Jong , Guillaume Baptist , Corinne Pinel , Caroline Ranquet , et al.
Molecular Systems Biology, 2013, 9 (1), pp.634. ⟨10.1038/msb.2012.70⟩
Journal articles hal-00793352v1

Le premier article scientifique de l'histoire de l'informatique ?

François Rechenmann
Interstices, 2012
Journal articles hal-00793354v1
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A Dirichlet Process Covarion Mixture Model and Its Assessments Using Posterior Predictive Discrepancy Tests

Yan Zhou , Henner Brinkmann , Nicolas Rodrigue , Nicolas Lartillot , Herve Philippe
Molecular Biology and Evolution, 2010, 27 (2), pp.371-384. ⟨10.1093/molbev/msp248⟩
Journal articles hal-03459113v1
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A Phylogenetic Model for Investigating Correlated Evolution of Substitution Rates and Continuous Phenotypic Characters

Nicolas Lartillot , Raphaël Poujol
Molecular Biology and Evolution, 2010, 28 (1), pp.729 - 744. ⟨10.1093/molbev/msq244⟩
Journal articles hal-03459132v1

Anaerobic oxidation of long-chain n-alkanes by the hyperthermophilic sulfate-reducing archaeon, Archaeoglobus fulgidus.

Nadia Khelifi , Oulfat Amin Ali , Philippe Roche , Vincent Grossi , Céline Brochier-Armanet , et al.
ISME Journal, 2014, pp.18. ⟨10.1038/ismej.2014.58⟩
Journal articles hal-01165315v1
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Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

Valentin Loux , Mahendra Mariadassou , Sintia Almeida , Hélène Chiapello , Amal Hammani , et al.
BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩
Journal articles hal-01142363v1
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Short and long-term genome stability analysis of prokaryotic genomes

Matteo Brilli , Pietro Liò , Vincent Lacroix , Marie-France Sagot
BMC Genomics, 2013, 14 (1), pp.309. ⟨10.1186/1471-2164-14-309⟩
Journal articles hal-00834426v1
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Novel definition and algorithm for chaining fragments with proportional overlaps

Raluca Uricaru , Alban Mancheron , Eric Rivals
Journal of Computational Biology, 2011, 18 (9), pp.1141-1154. ⟨10.1089/cmb.2011.0126⟩
Journal articles lirmm-00834143v1
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Regulation of initiation of follicle growth and dynamics of early follicular development in the sheep

Danielle Monniaux , Véronique Cadoret , Frederique Clement , Stéphane Fabre , Yann Locatelli , et al.
Annual Meeting of the American Society of Animal Science and Canadian Society of Animal Science (ASAS-CSAS), Jul 2018, Vancouver, Canada. pp.Abstract 126
Conference papers hal-02938008v1
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Tracing the origins of SARS-CoV-2 in coronavirus phylogenies

Erwan Sallard , José Halloy , Didier Casane , Etienne Decroly , Jacques van Helden
Médecine/Sciences, In press, Août-Septembre 2020, 36, ⟨10.1051/medsci/2020123⟩
Journal articles hal-02891455v8

Proteomic signature for early diagnosis of left ventricular remodeling after myocardial infarction

Wilfried Heyse , Vincent Vandewalle , Philippe Amouyel , Guillemette Marot , Christophe Bauters , et al.
Printemps de la cardiologie 2020, Oct 2020, Grenoble, France
Conference papers hal-03124801v1