Stochastic Reaction and Diffusion Systems in Molecular Communications: Recent Results and Open Problems
Malcolm Egan
,
Bayram Cevdet Akdeniz
,
Bao Quoc Tang
Journal articles
hal-03233615v1
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Receptor clustering affects signal transduction at the membrane level in the reaction-limited regime.
Bertrand R Caré
,
Hédi A Soula
Journal articles
hal-00858439v1
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Inferring gene regulatory networks from single-cell data: a mechanistic approach
Ulysse Herbach
,
Arnaud Bonnaffoux
,
Thibault Espinasse
,
Olivier Gandrillon
Journal articles
hal-01646910v1
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Cognitive Molecular Communication
Malcolm Egan
,
Trung Q Duong
,
Marco Di Renzo
,
Jean-Marie Gorce
,
Ido Nevat
,
et al.
2018 -3rd Workshop on Molecular Communications , Apr 2018, Ghent, Belgium. pp.1-2
Conference papers
hal-01728766v1
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Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells
Sarah Djebali
,
Julien Lagarde
,
Philipp Kapranov
,
Vincent Lacroix
,
Christelle Borel
,
et al.
PLoS ONE , 2012, 7, pp.1-22
Journal articles
hal-00698428v1
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Mathematical modeling of genetic regulatory networks: Stress responses in ıt Escherichia coli
Delphine Ropers
,
Hidde De Jong
,
Hans Geiselmann
P. Fu and M. Letterich and S. Panke. Systems Biology and Synthetic Biology , John Wiley & Sons, pp.235-271, 2009
Book sections
hal-00793019v1
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Modeling and formal verification of biological regulatory networks: an integrative approach
Pedro T. Monteiro
,
Ana T. Freitas
,
Delphine Ropers
,
Radu Mateescu
,
Hidde De Jong
Proceedings of the IEEE International Conference on Bioinformatics & Biomedicine (BIBM 2010). First Workshop on Knowledge Engineering, Discovery and Dissemination in Health (KEDDH10) , 2010, Ottawa, Canada
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hal-00793023v1
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A propos du séquençage de génomes
François Rechenmann
,
Joanna Jongwane
Interstices , 2010
Journal articles
hal-00793031v1
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Shared control of gene expression in bacteria by transcription factors and global physiology of the cell
Sara Berthoumieux
,
Hidde de Jong
,
Guillaume Baptist
,
Corinne Pinel
,
Caroline Ranquet
,
et al.
Journal articles
hal-00793352v1
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Le premier article scientifique de l'histoire de l'informatique ?
François Rechenmann
Interstices , 2012
Journal articles
hal-00793354v1
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Molecular Communication for Equilibrium State Estimation in Biochemical Processes on a Lab-on-a-Chip
Bayram Cevdet Akdeniz
,
Malcolm Egan
Journal articles
hal-03151618v1
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Equilibrium Signaling in Spatially Inhomogeneous Diffusion and External Forces
Malcolm Egan
,
Bayram Cevdet Akdeniz
,
Bao Quoc Tang
2020
Preprints, Working Papers, ...
hal-02910213v1
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First-Order Tests for Toricity
Hamid Rahkooy
,
Thomas Sturm
2020
Preprints, Working Papers, ...
hal-03017907v1
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Verification and synthesis using real quantifier elimination
Thomas Sturm
,
Ashish Tiwari
Conference papers
hal-03142063v1
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Linear Integer Arithmetic Revisited
Martin Bromberger
,
Thomas Sturm
,
Christoph Weidenbach
2015
Preprints, Working Papers, ...
hal-03145059v1
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MAGNETO: An Automated Workflow for Genome-Resolved Metagenomics
Benjamin Churcheward
,
Maxime Millet
,
Audrey Bihouée
,
Guillaume Fertin
,
Samuel Chaffron
Journal articles
hal-03781944v1
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Source-Target Proximity Analysis in Protein Networks Using Random Walks with Restart; Applications to Cancer Drug Resistance Prediction from Single-Cell Data
Frédéric Cazals
,
Jérémie Roux
,
Alain Jean-Marie
,
Dorian Mazauric
,
Guilherme Sales Santa Cruz
SophI.A 2019 - Springboard for Artificial Intelligence , Université Côte d'Azur, Nov 2019, Sophia-Antipolis, France
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hal-02432552v1
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Identification of metabolic network models from incomplete high-throughput datasets
Sara Berthoumieux
,
Matteo Brilli
,
Hidde De Jong
,
Daniel Kahn
,
Eugenio Cinquemani
Journal articles
hal-00793039v1
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Inferring structure and parameters of genetic regulatory networks: an approach based on hybrid systems
Riccardo Porreca
,
Samuel Drulhe
,
Hidde De Jong
,
Giancarlo Ferrari-Trecate
Workshop on Classification and Forecasting Models, ECOBIOSYS 2009 , 2009, Milano, Italy
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hal-00793016v1
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Vers la cellule virtuelle
Hidde De Jong
DocSciences , 2009, 8, pp.20-25
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hal-00793017v1
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From qualitative to quantitative models of gene regulatory networks in bacteria (extended abstract)
Hidde De Jong
Proceedings of 19th International Symposium on Mathematical Theory of Networks and Systems (MTNS 2010) , 2010, Budapest, Hungary
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hal-00793022v1
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Computational modeling and analysis of the yeast FLR1 regulatory network in mancozeb-challenged cells
Pedro T. Monteiro
,
Paulo J. Dias
,
Delphine Ropers
,
Arlindo L. Oliveira
,
Isabel Sà-Correia
,
et al.
11th International Conference on Systems Biology, ICSB 2010 , 2010, Edinburgh, United Kingdom. pp.105
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hal-00793029v1
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Modelling and analysis of protein aggregation - completing pathways in prion (PrP) polymerisation
Stephanie Prigent
,
Hadjer Wafaa Haffaf
2014
Other publications
hal-00958804v1
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Size distribution of amyloid brils. Mathematical models and experimental data.
Stephanie Prigent
,
Hadjer Wafaa Haffaf
,
H. T. Banks
,
M. Hoffmann
,
Human Rezaei
,
et al.
Journal articles
hal-00958785v2
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Microbial community functioning during plant litter decomposition
Simon Schroeter
,
Damien Eveillard
,
Samuel Chaffron
,
Johanna Zoppi
,
Bernd Kampe
,
et al.
Journal articles
hal-03781927v1
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Gene regulatory network inference from single-cell data using a self-consistent proteomic field
Ulysse Herbach
2021
Preprints, Working Papers, ...
hal-03370228v1
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Efficiently and Effectively Recognizing Toricity of Steady State Varieties
Dima Grigoriev
,
Alexandru Iosif
,
Hamid Rahkooy
,
Thomas Sturm
,
Andreas Weber
2019
Preprints, Working Papers, ...
hal-02397107v1
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A Linear Algebra Approach for Detecting Binomiality of Steady State Ideals of Reversible Chemical Reaction Networks
Hamid Rahkooy
,
Ovidiu Radulescu
,
Thomas Sturm
Book sections
hal-02977486v1
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Clustering of strong replicators associated with active promoters is sufficient to establish an early-replicating domain
Caroline Brossas
,
Anne-Laure Valton
,
Sergey V Venev
,
Sabarinadh Chilaka
,
Antonin Counillon
,
et al.
Journal articles
hal-03023038v1
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A Molecular Communication Scheme to Estimate the State of Biochemical Processes on a Lab-on-a-Chip
Bayram Cevdet Akdeniz
,
Malcolm Egan
NanoCoCoA 2020 - 1st ACM International Workshop on Nanoscale Computing, Communication, and Applications , Nov 2020, Virtual Event, Japan. pp.1-6,
⟨10.1145/3416006.3431272⟩
Conference papers
hal-03018289v1
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