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authFullName_s : Thomas Olivier

Microscopie confocale à balayage laser

Thomas Olivier , Baptiste Moine
Jean-Pierre Goure. L'optique dans les instruments : Applications à la médecine et à la biologie, Hermès/Lavoisier, pp.27-113, 2013, Optoélectronique, 9782746245297
Book sections ujm-01004404v1

Optimizing phase object reconstruction using an in-line digital holographic microscope and a reconstruction based on a Lorenz-Mie model

Thomas Olivier , Olivier Flasseur , Corinne Fournier , Loïc Méès
Unconventional Optical Imaging, Apr 2018, Strasbourg, France. pp.92, ⟨10.1117/12.2311321⟩
Conference papers hal-02406643v1

Assessment of bone vascularization and its role in bone remodeling

Marie-Hélène Lafage-Proust , Bernard Roche , Max Langer , Damien Cleret , Arnaud Vanden Bossche , et al.
BoneKEy Reports, 2015, 4 (19), pp.7543-7566. ⟨10.1038/bonekey.2015.29⟩
Journal articles hal-02058870v1

Single-shot high aspect ratio bulk nanostructuring of fused silica using chirp-controlled ultrafast laser Bessel beams

Manoj Bhuyan , Praveen Kumar Velpula , Jean-Philippe Colombier , Thomas Olivier , Nicolas Faure , et al.
Applied Physics Letters, 2014, 104 (2), pp.021107. ⟨10.1063/1.4861899⟩
Journal articles ujm-00931776v1
Image document

Reconstruct-to-refocus: joint reconstruction of a biological sample and of calibration objects for accurate auto-focusing in digital holography

Dylan Brault , Anthony Berdeu , Ferréol Soulez , Fabien Momey , Thomas Olivier , et al.
Digital Holography and Three-Dimensional Imaging, 2021, Washington, United States. pp.DW4C.8, ⟨10.1364/DH.2021.DW4C.8⟩
Conference papers hal-03926250v1
Image document

Joint reconstruction of an in-focus image and of the background signal in in-line holographic microscopy

Anthony Berdeu , Thomas Olivier , Fabien Momey , Loïc Denis , Frédéric Pinston , et al.
Optics and Lasers in Engineering, 2021, 146, pp.106691. ⟨10.1016/j.optlaseng.2021.106691⟩
Journal articles hal-03270308v1

Confocal Laser Scanning Microscopy

Thomas Olivier , B. Moine
Optics in Instruments: Applications in Biology and Medicine, Wiley-ITSE, 2013, 978-1-84821-244-2
Book sections hal-01078156v1
Image document

Automatic numerical focus plane estimation in digital holographic microscopy using calibration beads

Dylan Brault , Corinne Fournier , Thomas Olivier , Nicolas Faure , Sophie Dixneuf , et al.
Applied optics, 2022, 61 (5), pp.B345. ⟨10.1364/AO.444996⟩
Journal articles ujm-03571296v1
Image document

Extracellular Localization of the Diterpene Sclareol in Clary Sage (Salvia sclarea L., Lamiaceae)

Jean-Claude Caissard , Thomas Olivier , Claire Delbecque , Sabine Palle , Pierre-Philippe Garry , et al.
PLoS Biology, 2012, 7 (10), pp.e48253. ⟨10.1371/journal.pone.0048253⟩
Journal articles ujm-00749471v1

Robust autofocus for digital-holographic microscopy

Corinne Fournier , Dylan Brault , Thomas Olivier , Nicolas Faure , Sophie Dixneuf , et al.
Digital Holography and Three-Dimensional Imaging, Jul 2021, Vancouvers, Canada. pp.DM5E.4, ⟨10.1364/DH.2021.DM5E.4⟩
Conference papers ujm-03523591v1

Confocal laser scanning microscopy

Thomas Olivier , Baptiste Moine
Jean-Pierre Goure. Optics in Instruments: Applications in Biology and Medicine, Wiley-ISTE, pp.1-78, 2013, Waves series, 978-1-84821-244-2
Book sections ujm-01004399v1
Image document

Biaxial loading of arterial tissues with 3D in situ observations of adventitia fibrous microstructure: a method coupling multi-photon confocal microscopy and bulge inflation test

Cristina Cavinato , Clementine Helfenstein-Didier , Thomas Olivier , Sabine Rolland Du Roscoat , Norbert Laroche , et al.
Journal of the mechanical behavior of biomedical materials, 2017, ⟨10.1016/j.jmbbm.2017.07.022⟩
Journal articles hal-01566802v1

Building an inverse approach for the reconstruction of in-line holograms: a parallel with Fienup’s phase retrieval technique (Conference Presentation)

Fabien Momey , Loïc Denis , Thomas Olivier , Corinne Fournier
SPIE Photonics Europe 2020 Unconventional Optical Imaging II, Apr 2020, Online Only, France. pp.32
Conference papers hal-03153151v1
Image document

Reconstruction of in-line holograms: combining model-based and regularized inversion

Anthony Berdeu , Olivier Flasseur , Loïc Méès , Loïc Denis , Fabien Momey , et al.
Optics Express, 2019, 27 (10), pp.14951. ⟨10.1364/OE.27.014951⟩
Journal articles hal-02125177v1
Image document

Accurate unsupervised estimation of aberrations in digital holographic microscopy for improved quantitative reconstruction

Dylan Brault , Thomas Olivier , Ferréol Soulez , Sachin Joshi , Nicolas Faure , et al.
Optics Express, 2022, 30 (21), pp.38383-38404. ⟨10.1364/oe.471638⟩
Journal articles hal-03829725v1

Analysis of three-dimensional objects in quantitative phase contrast microscopy: a validity study of the planar approximation for spherical particles

Jérôme Dohet-Eraly , Loic Mees , Thomas Olivier , Frank Dubois , Corinne Fournier
SPIE Photonics Europe 2020, Apr 2020, Online Only, France. pp.33, ⟨10.1117/12.2557852⟩
Conference papers hal-03832178v1
Image document

From Fienup’s phase retrieval techniques to regularized inversion for in-line holography: tutorial

Fabien Momey , Loïc Denis , Thomas Olivier , Corinne Fournier
Journal of the Optical Society of America. A Optics, Image Science, and Vision, 2019, 36 (12), pp.D62-D80. ⟨10.1364/JOSAA.36.000D62⟩
Journal articles hal-02355096v2

Selective transmigration of monocyte-associated HIV-1 across a human cervical monolayer and its modulation by seminal plasma

Philip Lawrence , Didier Portran , Rachel Terrasse , Sabine Palle , Thomas Olivier , et al.
AIDS. Official journal of the international AIDS Society, 2012, 26 (7), pp.785 - 796. ⟨10.1097/QAD.0b013e328351426e⟩
Journal articles hal-02645686v1

Tomographies optiques et neuroimagerie

Darine Abi Haidar , Yaya Lefkir , Baptiste Moine , Stéphane Mottin , Thomas Olivier , et al.
Mifobio 2008 (MIcroscopie FOnctionnelle en BIOlogie), Sep 2008, Carqueiranne, France
Conference papers ujm-00384494v1

ExPACO: detection of an extended pattern under nonstationary correlated noise by patch covariance modeling

Olivier Flasseur , Loïc Denis , Éric Thiébaut , Thomas Olivier , Corinne Fournier
EUSIPCO 2019, Sep 2019, Coruna, Spain
Conference papers hal-02308808v1

Two-photon deep imaging through skin and skull of Zebra finch for in vivo brain metabolism monitoring.

Darine Abi-Haidar , Thomas Olivier , Stéphane Mottin , Clémentine Vignal , Nicolas Mathevon
SPIE, 2007, pp.64421M. ⟨10.5281/zenodo.439040⟩
Journal articles hal-01499789v1

Preliminary studies for deep two-photon transcranial brain activity monitoring of a songbird

Darine Abi Haidar , Thomas Olivier , Yaya Lefkir , Baptiste Moine , Stéphane Mottin
New Frontiers in Neurophotonics, Oct 2008, Bordeaux, France
Conference papers ujm-00369200v1

Construction and tropism characterisation of recombinant viruses exhibiting HIV-1 env gene from seminal strains

Philip Lawrence , Willy Berlier , Olivier Delézay , Sabine Palle , Thomas Olivier , et al.
Virology, 2009, 386 (2), pp.373-379. ⟨10.1016/j.virol.2009.01.028⟩
Journal articles ujm-00369194v1

Confocal reflectance and two-photon microscopy studies of a songbird skull for preparation of transcranial imaging

Darine Abi Haidar , Thomas Olivier
Journal of Biomedical Optics, 2009, 14 (3), pp.034038. ⟨10.1117/1.3155522⟩
Journal articles ujm-00402136v1
Image document

Image reconstruction from in-line holograms using inverse problems recipes: tutorial

Fabien Momey , Loïc Denis , Thomas Olivier , Dylan Brault , Anthony Berdeu , et al.
IEEE International Symposium on Biomedical Imaging (ISBI) 2021, Apr 2021, Virtual Event, France.
Conference poster hal-03376978v1

Selective transmigration of monocyte-associated HIV-1 across a human cervical monolayer and its modulation by seminal plasma

Philip Lawrence , Didier Portran , Rachel Terrasse , Sabine Palle , Thomas Olivier , et al.
AIDS. Official journal of the international AIDS Society, 2012, 26 (7), pp.785-96
Journal articles ujm-00749507v1

Direct contact of platelets and their released products exert different effects on human dendritic cell maturation

Hind Hamzeh-Cognasse , Fabrice Cognasse , Sabine Palle , Patricia Chavarin , Thomas Olivier , et al.
BMC Immunology, 2008, 9 (54), ⟨10.1186/1471-2172-9-54⟩
Journal articles ujm-00351116v1
Image document

MÉTHODOLOGIE "PROBLÈMES INVERSES" POUR LA RECONSTRUCTION D'HOLOGRAMMES EN LIGNE D'OBJETS DE PHASE ET/OU ABSORBANTS

Fabien Momey , Frédéric Jolivet , Loïc Denis , Anthony Berdeu , Olivier Flasseur , et al.
Holophi5 : 5ème rencontre francophone d'holographie numérique appliquée à la métrologie des fluides, Nov 2018, Montpellier, France
Conference papers hal-02140871v1

Two-photon deep imaging through skin and skull of Zebra finches: preliminary studies for in-vivo brain metabolism monitoring

Darine Abi Haidar , Thomas Olivier , Stéphane Mottin , Clémentine Vignal , Nicolas Mathevon
Multiphoton Microscopy in the Biomedical Sciences VII, 2007, San Jose, United States. pp.64421M.1-64421M.10, ⟨10.1117/12.701464⟩
Conference papers ujm-00155652v1